Long Noncoding RNAs in Yeast Cells and Differentiated Subpopulations of Yeast Colonies and Biofilms

Figure 3

UpSet plot of datasets of coregulated and antiregulated genes in the upper and lower parts of biofilm colonies (Aer/Rt) and of 6-day-old (U6/L6) and 15-day-old (U15/L15) smooth colonies. Coregulated and antiregulated gene/lncRNA pairs in three cell comparisons: aerial versus roots of biofilm colonies, upper cells versus lower cells of 6-day-old smooth colonies, and upper cells versus lower cells of 15-day-old smooth colonies [16, 17]. Horizontal blue bar chart indicates numbers of genes, co-/antiregulated (with lncRNA) in each individual comparison. The black dots and lines (intersect “connectors”) above the heat map indicate comparisons in which the given number of genes (vertical red bar chart) were co-/antiregulated. Only major intersections are shown. Heat map of genes assigned to functional categories and clustered according to functional category (FC) and co-/antiregulated in different sample comparisons (lower part). Number in heat map cell = number of genes from FC, coregulated or antiregulated with lncRNA in a sample comparison. The higher the number of co-/antiregulated genes, the more intense the colour. A: antiregulated; C: coregulated.