PHINDaccess Hackathons for COVID-19 and Host-Pathogen Interaction: Lessons Learned and Recommendations for Low- and Middle-Income Countries

Table 1

Summary of tools, databases and repository used during the hackathons.

Databases		GenBank (https://www.ncbi.nlm.nih.gov/genbank)
		GISAID (https://gisaid.org/)
		EBI/ENA (https://www.ebi.ac.uk/ena/browser/home)
		PubMed (https://pubmed.ncbi.nlm.nih.gov/)
		NCBI (https://www.ncbi.nlm.nih.gov/)
Tools	Communication tools	Slack
		WhatsApp
		Google Meet
		Google Docs
Tools	Bioinformatics tools	FastQC
		Trimmomatic
		BWA
		SPAdes
		GATK4
		Shiny, ShinyDashboard, visNetwork
		RSeQC
		Skewer
		STAR
		SALMON
		DESeq2
		EdgeR
	Programming language	Perl
		R
		Shell
		Python
		Nextflow
Repository		GitHuB