Association Study of the Caspase Gene Family and Psoriasis Vulgaris Susceptibility in Northeastern China
Table 7
Haplotype analysis of SNPs on the same chromosome for all samples.
Chr.
SNP
Haplotype
Ca-freq.
N-Ca (540)
Co-freq.
N-Co ( 612)
P
1
rs4233532
CC
0.048
25.92
0.053
32.436
0.9226
rs1052576
CT
0.369
199.26
0.364
222.768
TC
0.583
314.82
0.583
356.796
11
rs506601
ACCCG
0.034
18.36
0.027
16.524
0.0093
rs547584
ACCTA
0.116
62.64
0.102
62.424
rs672016
ACGTA
0.028
15.12
0.023
14.076
rs507879
ATCCG
0.057
30.78
0.067
41.004
rs2282659
ATCTA
0.265
143.1
0.277
169.524
ATCTG
0.014
7.56
0.022
13.464
ATGCG
0.049
26.46
0.041
25.092
ATGTA
0.141
76.14
0.139
85.068
TTCCG
0.033
17.82
0.047
28.764
TTCTA
0.245
132.3
0.238
145.656
TTCTG
0.018
9.72
0
0
TTGTA
0
0
0.017
10.404
10
rs17090911
AC
0.094
50.76
0.072
44.064
0.0448
rs2227310
GC
0.473
255.42
0.544
332.928
GG
0.433
233.82
0.384
235.008
2
rs12613347
CACT
0
0
0.012
7.344
0.0038
rs13006529
CATG
0
0
0.01
6.12
rs6704688
CATT
0.2
108
0.196
119.952
rs2293554
CTCG
0.159
85.86
0.164
100.368
CTCT
0.263
142.02
0.248
151.776
CTTT
0.023
12.42
0.023
14.076
TTCG
0.05
27
0.064
39.168
TTCT
0.305
164.7
0.268
164.016
TTTT
0
0
0.015
9.18
4
rs2705897
CGC
0.179
96.66
0.124
75.888
0.00004
rs4647610
CGT
0
0
0.016
9.792
rs5030545
CTC
0.164
88.56
0.161
98.532
CTT
0.576
311.04
0.613
375.156
TGC
0
0
0.023
14.076
TTC
0.017
9.18
0.02
12.24
TTT
0.064
34.56
0.043
26.316
Chr.: chromosome; SNP: single nucleotide polymorphism; N-Ca: number of case group; Ca-freq.: case group frequencies; N-Co: number of control group; Co-freq.: control group frequencies; P: p value.
