|
| Present in | Absent from | Locus | Gene names | Role | Description and comments |
|
| YE | YP | CBY25444.1-
CBY25441.1 | aapJQMP | Transportation | ABC transporter (L-amino acids). |
|
| YE | YP | CBY25938.1-
CBY25944.1 | sorEMABF | Transportation | Phosphotransferase system (sorbose) [21]. |
|
| YE | YP, YE str. 8081 | CBY25947.1-
CBY25953.1 | urtEDCBA | Transportation | ABC transporter (urea). This copy of operon is absent from strain 8081. |
|
| YE | YP | CBY26058.1-
CBY26056.1 | aglBA | Transportation | Phosphotransferase system (alpha-glycosides). |
|
| YE | YP | CBY26159.1-
CBY26152.1 | — | Transportation | ABC transporter (metallic ion). |
|
| YE | YP | CBY26547.1-
CBY26568.1 | pduVUTONMLKJBA | Propanediol utilization | 1,2-Propanediol utilization [21]. |
|
| YE | YP | CBY26570.1-
CBY26589.1 | cbiGKNQO | Propanediol utilization | Cobalamin synthesis [21]. |
|
| YE | YP | CBY26648.1-
CBY26640.1 | citXFEDCAB | Metabolism | Citrate lyase, ability to ferment citrate in anaerobic conditions. |
|
| YE | YP | CBY26805.1-
CBY26815.1 | rutGEFDCGR | Nitrogen metabolism | Pyrimidine utilization. Use of pyrimidines as a source of nitrogen in E. coli. Genes rutA and rutG are interrupted in Y. enterocolitica. |
|
| YE | YP | CBY28018.1-
CBY28009.1 | scsBCD | Resistance | Suppressor for copper sensitivity operon 2. Similar operon described in E. coli. |
|
| YE | YP | CBY28023.1-
CBY28018.1 | — | Transportation | Phosphotransferase system (lactose/cellobiose). |
|
| YE | YP | CBY28059.1-
CBY28057.1 | ascGFB | Transportation | Phosphotransferase system (β-glycosides). |
|
| YE | YP | CBY28068.1-
CBY28065.1 | yrbFE | Transportation | ABC transporter (YrbF/E). |
|
| YE | YP | CBY28213.1-
CBY28205.1 | gutQRMDBEA | Transportation | Phosphotransferase system (glucitol/sorbitol). |
|
| YE | YP | CBY28759.1-
CBY28735.1 | gldA, dhaKR, scrRBAYK | Metabolism, transportation | Glycerol metabolism operon, phosphotransferase system (sucrose). |
|
| YE | YP | CBY29405.1-
CBY29415.1 | bcsCBAFEG | Gut colonization | Cellulose biosynthesis [21]. |
|
| YE | YP | CBY29454.1-
CBY29443.1 | manA, bglA, gmuD | Transportation | Phosphotransferase system (lactose/cellobiose), maltoporin, and β-glucosidase |
|
| YP | YE | CAH19316.1-
CAH19320.1 | — | Transportation | ABC transporter (molybdate-malate). |
|
| YP | YE | CAH19585.1-
CAH19591.1 | — | Resistance | Methyltetrahydrofolate reduction, conserved with ter operon |
|
| YP | YE | CAH19592.1-
CAH19597.1 | terZABCDE | Resistance | Tellurite/tellurium resistance. Similar to the operon in Y. pestis plasmid. |
|
| YP | YE | CAH19782.1-
CAH19785.1 | frwDBC, pstA | Transportation | Phosphotransferase system (fructose). |
|
| YP | YE | CAH19879.1-
CAH19896.1 | impACG, hcp, vasG, icmF | Type VI secretion | YPTB T6SS-1, interbacterial interaction. |
|
| YP | YE | CAH20037.1-
CAH20044.1 | sgbK, araD | Transportation | ABC transporter (L-xylose), epimerase. |
|
| YP | YE | CAH20283.1-
CAH20290.1 | — | Unknown | CDP-diacylglycerol synthesis operon. A similar gene cluster of unknown function has been described in E. coli. |
|
| YP | YE | CAH20313.1-
CAH20316.1 | — | Transportation | ABC transporter (myoinositol), dehydrogenase. |
|
| YP | YE | CAH20560.1-
CAH20567.1 | rpiA | Transportation | ABC transporter (sugar), dehydrogenase. |
|
| YP | YE | CAH20608.1-
CAH20613.1 | — | Transportation | ABC transporter (iron). |
|
| YP | YE | CAH20708.1-
CAH20725.1 | — | Type VI secretion | Conserved area before type VI secretion system. |
|
| YP | YE | CAH20725.1-
CAH20742.1 | impKL, hcp, vasGD | Type VI secretion | YPTB T6SS-2. |
|
| YP | YE | CAH20812.1-
CAH20822.1 | lidD | Transportation | Symport. |
|
| YP | YE | CAH20875.1-
CAH20884.1 | hpaRGEDFHIXBC | Use of aromatic substances | Hpa operon. |
|
| YP | YE | CAH20923.1-
CAH20928.1 | — | Transportation | ABC transporter (sugar). |
|
| YP | YE | CAH21145.1-
CAH21154.1 | — | Transportation | ABC transporter (sorbitol). |
|
| YP | YE | CAH21162.1-
CAH21172.1 | — | Transportation | MFS transporter (aromatic acids). |
|
| YP | YE | CAH21251.1-
CAH21255.1 | potDCBA | Transportation | ABC transporter (polyamines). |
|
| YP | YE | CAH21445.1-
CAH21448.1 | tauB | Transportation | Transporter (taurine/sulfonate). |
|
| YP | YE | CAH21739.1-
CAH21760.1 | manB, mtlK | Transportation | MFS transporter (sugar), ABC transporter (sugar), and CRISPR repeats. |
|
| YP | YE | CAH21766.1-
CAH21777.1 | gutB | Transportation | Carnitine transporter, tartrate dehydrogenase, and ABC transporter (sorbitol). |
|
| YP | YE | CAH22045.1-
CAH22050.1 | goaG | Transportation | ABC transporter (opines/polyamines). |
|
| YP | YE | CAH22292.1-
CAH22299.1 | gspLKJHI | Type II secretion | General secretion pathway. |
|
| YP | YE | CAH22307.1-
CAH22312.1 | — | Growth on chondroitin sulfate | Secreted chondroitin ABC lyase. |
|
| YP | YE | CAH22317.1-
CAH22328.1 | kduD2 | Transportation | Phosphotransferase system (N-acetylgalactosamine), chondro-6-sulfatase. |
|
| YP | YE | CAH22333.1-
CAH22353.1 | lamb, bgaB | Transportation | ABC transporter (maltodextrin/maltose/ribose). |
|
| YP | YE | CAH22467.1-
CAH22469.1 | mglA | Transportation | ABC transporter (sugar). |
|
| YP | YE | CAH22662.1-
CAH22687.1 | yapF | Transportation | Na+/H+-antiport, ABC transporter (sugar). |
|
| YP | YE | CAH23038.1-
CAH23046.1 | — | Transportation | ABC transporter (ribose), two-component system. |
|
| YE 4/O:3 | YE BT 1–3, YP | CBY26503.1-
CBY26517.1 | | Serotype O:3 antigen | dDTP-L-rhamnose biosynthesis [22, 23]. |
|
| YE 4/O:3 | YE BT 1–3, YP | CBY26512.1-
CBY26517.1 | | Serotype O:3 antigen | Conserved area posterior to the O:3 antigen. Hypothetical proteins, transposon. |
|
| YE BT 2–4 | YE BT 1A, 1B; YP | CBY25728.1-
CBY25740.1 | aatBCAP, araC | Resistance | Multidrug efflux system. Cluster includes 6 genes and 7 hypothetical insertion sequences. |
|
| YE BT 2–4, 1 | YE BT 1A, 1B; YP | CBY29000.1-
CBY29007.1 | sseDBCEBF | Virulence, type III secretion | Type III secreting effectors and chaperones. Salmonella type III secretion Sse operon is involved in interaction with macrophages. |
|
| YE BT 2–4, 1A | YE BT 1B | CBY28981.1-
CBY29013.1 | ysp | Virulence, type III secretion | Not fully conserved in biotype 1A strains [24]. |
|
| YE BT 2–4, 1A | YE BT 1B | CBY26978.1-
CBY26985.1 | agaRZVWEFSY | N-Acetylgalactosamine
utilization | Use of intestinal mucin as a carbon source [24]. |
|
