Research Article

Sequence Alignment Tools: One Parallel Pattern to Rule Them All?

Table 1

Datasets.

Dataset Platform Read length (bp) Reads count

SRR534301 Illumina 101 108,749,331
SRR072996 Illumina 20 60,673,318
lane2_CTL_qseq Illumina 36 53,673,423
SRR568427 Illumina 36 53,594,954
SRR502198 Illumina 36 25,675,656
SRR078586 Illumina 8–48 3,101,013
SRR003161 454 GS FLX 47–4,931 1,376,701
SRR341579 Illumina 202 6,143,624
SRR027963 Illumina 76 18,145,940
Human-Ref19-1 PacBio 35–35,488 25,249
Human-Ref19-2 PacBio 35–34,583 17,797
Drosophila M. PacBio 55–6,883 332,369