Research Article
An Improved Distance Matrix Computation Algorithm for Multicore Clusters
Table 1
Used benchmark dataset specifications.
| Benchmark | Number of sequences | Average length | Standard deviation |
| Human immunodeficiency virus (HIV) | 3,000 | 858 | 10.745 | 6,000 | 858 | 14.632 |
| HA hemagglutinin (influenza B virus) | 2,000 | 1,741 | 32.604 | 4,000 | 1,728 | 36.661 |
| Several viruses within the Coronaviridae family | 200 | 30,488 | 908.534 | 500 | 29,414 | 1,066.417 |
| Herpesviridae (large family of DNA viruses) | 20 | 163,654 | 47,330.32 | 50 | 161,000 | 42,899.81 |
|
|