Augmenting High-Performance Mobile Cloud Computations for Big Data in AMBER

Table 3

Parameters required to calculate dihedral angle terms and half nonbonded terms.

Sr. No.	Parameter	Description
(1)	“dihedralAngleTerms [ix7]”	All the four values of dihedral angle terms according to functional form
(2)	“coordinates [atomix3]”	, , coordinates of atom stored in array
(3)	“phiDeg”	Bend of angle represented in degree keeping in view radian to degree relationship
(4)	“app”	Intermediate variable to calculate phiDeg
(5)	“energy”	The partial value of energy due to dihedral angle terms is calculated and stored in it
(6)	“coulombFactor”	It is calculated using permittivity and permittivity scale and a constant value 116
(7)	“halfNonBondedTerms [ix4]”	All the four values of half nonbonded terms according to functional form
(8)	“chargei”	Value of charge on atom i
(9)	“chargej”	Value of charge on atom j
(10)	“coordinates [atomix3]”	, , coordinates of atom stored in array