| Molecule family | Encoded proteins | References |
| Cytokines | TNF-α ↓, IL-1B ↑↓, IL-6 ↓, IL-10 ↓, IL-12 ↑, Tnf-α ↓, Il-6 ↓ | [126, 145, 147, 148, 150–152] | Chemokines | IL-8 ↓, CCL2 ↑, CCL5 ↓, CCL7 ↑, CCL13 ↑, CCL22 ↑, Cxcl10 ↓, CXCL9 ↓, CXCL10 ↓, CXCL11 ↓ | [126, 145, 147–149, 151–154, 158, 165] | Chemokine receptors | CCR2 ↑, CCR5 ↑ | [153, 154] | Prostaglandin metabolism | PTGS1 ↑, PTGS2 ↑ | [156] | Oxidative stress | GSH ↓, Gsh ↓, iNOS ↑, HO-1 ↓ | [147, 150, 155, 165, 167] | Iron metabolism | Hemosiderin ↑, transferrin ↑, transferrin receptor ↓, ferritin ↑ | [172–175, 219] | Proteinases | MMP-1 ↑, MMP-2 ↑, MMP-7 ↑, MMP-9 ↑ (SNPs), MMP-12 ↑, matriptase ↑ | [154, 188–194, 196] | Neutrophil proteases and inhibitors | α1-Antitrypsin | [185] | Chitinolytic activity | CHIT1 ↑, YKL-40 ↑ | [199, 200] | Recognition markers | CD31 ↓, CD44 ↓, CD91 ↓, CR-3 ↑, CR-4 ↑, DC-SIGN ↑, MARCO ↓ | [150, 219, 226] | Cytoskeletal rearrangements | RAC1 ↓, VAV1 ↓, RhoA ↑ | [216, 229] | Mitochondrial stress | MCL-1 ↑ | [230] | Integrins, scavenger receptors, and adhesion molecules | CD11a ↓, CD11c ↑, CD163 ↑, CD204 ↑, CD206 ↑, MSR-1 (SNPs), MERTK ↑ | [220, 227, 234, 235] | Antigen presentation molecules | MHC-I ↓, MHC-II ↓, HLA-DR ↓, CD80 ↓ | [150, 233] | Fc gamma receptors, PRRs | FcγR1 ↑, CD16 ↓, TLR2 ↓, TLR3 ↓, TLR4 ↓, TLR5 ↑, TLR9 (SNPs) | [126, 148, 150, 158, 165, 206, 233, 234, 236–238] |
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