Research Article

A Systolic Array-Based FPGA Parallel Architecture for the BLAST Algorithm

Table 3

Experimental database for different algorithms.

Software version Experiments data source Experiments data size

BLASTp/BLASTx Swiss-Prot 532146 sequences,
188719038 characters
TBLASTn/TBLASTx Drosoph.nt 1170 sequences,
122655632 characters