Mapping of Micro-Tom BAC-End Sequences to the Reference Tomato Genome Reveals Possible Genome Rearrangements and Polymorphisms

Table 4

Number of polymorphisms found in genic and intergenic regions in each chromosome.

			SL2.40ch01	SL2.40ch02	SL2.40ch03	SL2.40ch04	SL2.40ch05	SL2.40ch06	SL2.40ch07	SL2.40ch08	SL2.40ch09	SL2.40ch10	SL2.40ch11	SL2.40ch12	Total
Genic	Exon	3′ UTR	115	100	127	108	62	58	59	87	47	15	0	0	778
		5′ UTR	157	58	48	23	26	34	28	14	38	2	0	0	428
		CDS	1,152	967	1,031	758	820	603	757	605	669	570	662	615	9,209
	Intron	Intron	2,035	1,938	2,023	1,971	1,547	1,122	1,778	1,154	1,425	994	1,947	1,172	19,106
		Splice junction	19	15	12	13	14	15	13	8	8	7	12	12	148
Intergenic			12,993	11,739	10,867	9,985	29,451	5,719	9,216	8,807	9,976	8,923	14,010	10,437	142,123
Total			16,471	14,817	14,108	12,858	31,920	7,551	11,851	10,675	12,163	10,511	16,631	12,236	171,792