A Mid-Density Single-Nucleotide Polymorphism Panel for Molecular Applications in Cowpea (Vigna unguiculata (L.) Walp)

Table 4

Significant SNP markers associated with flower and seed colors in cowpea on chromosome Vu07.

Trait	Marker ID	Chromosome	Pos (bp)	-Log10(p)	PVAR
FlowerCol^a	2_34565	Vu07	23,705,735	10.14	18%
	2_47670	Vu07	20,629,436	9.94	18%
	2_47424	Vu07	24,060,891	9.45	28%
	2_17108	Vu07	20,465,839	8.82	16%
	2_01670	Vu07	20,808,628	7.87	14%
	2_19077	Vu07	22,712,648	7.77	14%
	2_18459	Vu07	21174521	7.55	13%
	2_43619	Vu07	22202114	6.95	12%
	2_55172	Vu07	20295282	6.74	12%
	2_06783	Vu07	19694195	6.70	12%
	2_12758	Vu07	23341686	6.65	12%
	2_13172	Vu07	25261206	6.38	11%
	2_47143	Vu07	17922038	6.35	11%
	2_51319	Vu07	19490375	6.32	11%
	2_14370	Vu07	25158752	6.18	11%
	2_03953	Vu07	24658559	6.13	11%
	2_12882	Vu07	24521329	6.10	11%
	2_03283	Vu07	23239607	5.66	10%
	2_04843	Vu07	25438449	4.89	8%
	2_09527	Vu07	26085154	4.44	8%
SeedCol^b	2_06783	Vu07	19,694,195	6.86	12%
	2_47143	Vu07	17,922,038	5.96	10%
	2_51319	Vu07	19,490,375	4.44	8%
	2_54172	Vu07	15,774,834	3.84	7%
	2_12490	Vu07	24,420,693	3.83	7%
	2_19423	Vu07	25,863,610	3.74	6%

^aFlower color. ^bSeed color. SNPs significantly associated with both flower and seed color. PVAR refers to percent variance explained by the SNP.