Effects of Inbreeding on Genetic Characteristic, Growth, Survival Rates, and Immune Responses of a New Inbred Line of Exopalaemon carinicauda

Table 2

Characteristics of the 31 SNP markers for E. carinicauda.

SNP loci	SNP type	Ho	He	PIC	MAF	Annotation
EcSNP011	A/C	0.484	0.651	0.364	0.395	MAP kinase-interacting serine/threonine-protein
EcSNP017	C/T	0.493	0.558	0.368	0.419	Actin cytoskeleton organization and biogenesis protein
EcSNP020	A/C	0.507	0.833	0.368	0.417	Rhophilin Rho GTPase-binding protein 1
EcSNP037	A/G	0.436	0.442	0.338	0.314	Ras-like GTP-binding protein Rho1
EcSNP056	C/T	0.488	0.767	0.366	0.407	Inositol hexakisphosphate kinase
EcSNP057	G/T	0.444	0.512	0.343	0.326	Inositol hexakisphosphate kinase
EcSNP063	A/G	0.488	0.674	0.366	0.407	Unknown
EcSNP072	A/G	0.208	0.186	0.184	0.116	Heat shock protein 70
EcSNP092	A/C	0.361	0.326	0.293	0.233	Skeletal receptor tyrosine protein kinase
EcSNP098	C/T	0.460	0.419	0.351	0.349	Skeletal receptor tyrosine protein kinase
EcSNP105	A/G	0.503	0.791	0.374	0.465	Unknown
EcSNP131	C/T	0.510	0.792	0.375	0.479	Unknown
EcSNP137	C/T	0.391	0.500	0.305	0.250	Condensin complex subunit 2
EcSNP155	A/G	0.427	0.372	0.333	0.302	Heat shock protein 70
EcSNP161	A/G	0.506	0.674	0.375	0.500	Heat shock protein 70
EcSNP177	C/T	0.488	0.674	0.366	0.407	Unknown
EcSNP182	C/T	0.502	0.581	0.373	0.454	Heat shock protein 70
EcCat-2	A/G	0.497	0.833	0.368	0.417	Cathepsin L
EcFABP-2	C/T	0.507	0.833	0.373	0.458	Fatty acid-binding protein
EcMHC-4	C/T	0.489	0.625	0.364	0.396	Myosin heavy chain type 2
EcMHC-5	A/G	0.497	0.833	0.368	0.417	Myosin heavy chain type 2
EcMHC-6	C/G	0.507	0.583	0.373	0.458	Myosin heavy chain type 2
EcMHC-7	A/G	0.503	0.458	0.371	0.438	Myosin heavy chain type 2
EcMLC-2	C/T	0.479	0.750	0.359	0.375	Myosin light chain
EcMLC-4	C/T	0.497	0.583	0.368	0.417	Myosin light chain
EcTroC-4	C/T	0.403	0.542	0.317	0.271	Troponin C
EcSmad3-3	A/G	0.511	0.833	0.375	0.500	Smad3
EcTGFI-6	G/T	0.467	0.625	0.353	0.354	TGF-beta-induced protein
EcTGFI-10	C/T	0.479	0.667	0.359	0.375	TGF-beta-induced protein
EcTGFI-15	C/T	0.489	0.792	0.364	0.396	TGF-beta-induced protein
EcBMP2-3	C/T	0.454	0.667	0.346	0.333	Bone morphogenetic protein 2
Max		0.511	0.833	0.375	0.500
Min		0.208	0.186	0.184	0.116
Mean		0.467	0.625	0.352	0.382

Note: Ho: observed heterozygosity; He: expected heterozygosity; PIC: polymorphism information content; MAF: minor allele frequency.