Research Article
Enriching Genomic Resources and Marker Development from Transcript Sequences of Jatropha curcas for Microgravity Studies
Table 1
Summary statistics of the transcript sequence reads assembly.
| | Raw sequence | Assembled contigs (Newbler) | UASs (>100 bp) (Newbler + CD-HIT) | Contigs (>100 bp) (Newbler + CD-HIT) |
| Number of sequences | 1,714,433 | 27,897 | 115,611 | 20,624 | Min length | 40 | 1 | 100 | 100 | Max length | 956 | 11,929 | 11,929 | 11,929 | Median length | 464 | 839 | 491 | 1168.5 | Average length | 441.2 | 1082.2 | 621.0 | 1380.9 | N25 | — | 2,481 | 1,435 | 2,554 | N50 | — | 1,679 | 556 | 1,746 | N75 | — | 1,036 | 471 | 1,150 | N90 | — | 607 | 396 | 751 | GC% | 41.67 | 40.45 | 39.54 | 40.56 |
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