Research Article

De Novo Transcriptome Sequencing of the Orange-Fleshed Sweet Potato and Analysis of Differentially Expressed Genes Related to Carotenoid Biosynthesis

Table 3

Differentially expressed genes and transcription factors related to carotenoid biosynthesis between Weiduoli and HVB-3.

Gene IDLog2 fold-changeFDRBlast annotation

Genes
c27179.graph_c02.280Geranylgeranyl pyrophosphate synthase
c35889.graph_c0−2.19Geranylgeranyl diphosphate reductase
c41187.graph_c42.29Dehydrodolichyl diphosphate synthase
c21698.graph_c0−3.96Alcohol dehydrogenases homologous
c30364.graph_c12.080Aldehyde dehydrogenase
c34785.graph_c0−2.46Alcohol dehydrogenase
c37165.graph_c0−2.81Long chain acyl-CoA synthetase
c26028.graph_c0−1.58Cytochrome P450 82A2
c29728.graph_c02.960.01Cytochrome P450 82A4
c29775.graph_c1−2.200Cytochrome P450 86B1-like
c33165.graph_c0−2.030Cytochrome p450 CYP82D47-like
c34761.graph_c01.770Cytochrome P450 89A2
c34982.graph_c1−2.66Cytochrome P450 82C4
c36936.graph_c0−2.50Cytochrome p450 86B1-like
c38370.graph_c02.110Cytochrome P450 CYP72A219
c38487.graph_c0−1.670.01Cytochrome P450 82C4
c40387.graph_c02.38Cytochrome P450 83B1
c40784.graph_c0−1.510Cytochrome P450 CYP736A12
c41229.graph_c0−2.70Cytochrome P450 78A5
c41281.graph_c11.220.01Cytochrome P450 76A2
c41491.graph_c01.320.01Cytochrome P450 CYP72A219-like
c42321.graph_c03.400Cytochrome P450 71A1

Transcription factors
c39444.graph_c02.10NAC domain-containing protein
c39928.graph_c02.14NAC domain-containing protein
c41510.graph_c01.550NAC domain-containing protein
c4748.graph_c03.66MYB-like transcription factor
c27997.graph_c02.180Ethylene-responsive transcription factor
c32755.graph_c03.98Ethylene-responsive transcription factor
c32755.graph_c13.20Ethylene-responsive transcription factor
c34264.graph_c01.920Ethylene-responsive transcription factor
c34616.graph_c01.270.01Ethylene-responsive transcription factor
c35745.graph_c12.64Ethylene-responsive transcription factor
c36135.graph_c01.320Ethylene-responsive transcription factor
c37886.graph_c11.410Ethylene-responsive transcription factor
c39393.graph_c01.420Ethylene-responsive transcription factor
c40060.graph_c01.450Ethylene-responsive transcription factor
c40767.graph_c11.48Ethylene-responsive transcription factor
c41013.graph_c01.59Ethylene-responsive transcription factor
c29615.graph_c01.910Zinc finger protein
c30636.graph_c01.560.01Zinc finger protein
c33159.graph_c01.630.01Zinc finger protein
c33843.graph_c01.91Zinc finger protein
c34456.graph_c01.430Zinc finger protein
c35956.graph_c03.370Zinc finger protein
c36278.graph_c01.830Zinc finger protein
c36428.graph_c11.78Zinc finger protein
c33226.graph_c12.30WRKY transcription factor
c34181.graph_c01.590.01WRKY transcription factor
c39751.graph_c01.360.01WRKY transcription factor
c35456.graph_c01.710bZIP transcription factor
c39175.graph_c01.550bZIP transcription factor
c41663.graph_c11.95bZIP transcription factor
c19855.graph_c02.660Auxin response factor