Uses of Phage Display in Agriculture: Sequence Analysis and Comparative Modeling of Late Embryogenesis Abundant Client Proteins Suggest Protein-Nucleic Acid Binding Functionality
Table 2
Patterns and motifs identified using InterProScan and the patmatmotifs utility as part of the EMBOSS package. The full-length protein is identified by the TAIR locus identifier. Patterns and motifs have been separated according to their position either within the binding region or exclusive of the binding region.
Full-length (excludes binding region)
Binding Region
AT1G15280.1
Amidation motif
Amidation motif
AT1G15290.1
Amidation motif (2) Leucine zipper Coiled coil
Amidation motif
AT1G16610.1
Amidation motif
RGD
AT1G30610.1
RGD ATP/GTP A
—
AT1G32810.2
Zinc finger plant homeodomain Amidation motif (4)
Coiled coil
AT1G54870.1
—
Short-chain dehydrogenase
AT1G55310.3
Amidation motif (2)
—
AT1G58210.1
Coiled coil (11) Leucine zipper
Amidation motif (2)
AT1G65090.2
Amidation motif
—
AT1G75830.1
—
Gamma thionin
AT2G02160.1
Amidation motif Coiled coil
Amidation motif
AT2G19540.1
Amidation motif
—
AT2G31410.1
Coiled coil
—
AT2G36640.1
Microbodies C-ter Coiled coil (2)
Coiled coil
AT3G01690.1
—
Amidation motif
AT3G55170.1
—
Ribosomal L29
AT3G58680.1
Coiled coil
Amidation motif
AT3G63400.3
Prolyl-peptidyl isomerase ATP/GTP A (2) Amidation motif (3)
