| Subfamilies | SIT no. | 1990s (1994, 1998) | 2000s (2003–2006) | value | No. of strains | % | No. of strains | % |
| Beijing | 1 | 337 | 60.2 | 311 | 62.8 | 0.3776 | Beijing | 190 | 17 | 3.0 | 20 | 4.0 | 0.3760 | Beijing-like | 269 | 18 | 3.2 | 34 | 6.9 | 0.0062 | Beijing-like | 406 | 3 | 0.5 | 6 | 1.2 | — | Beijing | 255, 265, 541, 621, 796, 1168, 1311, 1364, 2610 | 11 | 2.0 | 10 | 2.1 | — | T | 102 | 2 | 0.4 | 5 | 1.0 | | T1 | 53 | 73 | 13.0 | 40 | 8.1 | 0.0094 | T2 | 52 | 18 | 3.2 | 12 | 2.4 | 0.4410 | T3-OSA | 627 | 6 | 1.1 | 3 | 0.6 | — | T, T1, T2, T3, T5, ambiguous: T3 T2 | 7, 37, 44, 51, 73, 78, 167, 172, 240, 285, 291, 393, 395, 444, 498, 516, 804, 853, 875, 888, 956, 966, 1214, 1223, 1252, 1597, 1622, 1916, 2538, 2867, 3254, 3283 | 29 | 5.2 | 21 | 4.2 | — |
| Total | | 514 | 91.8 | 462 | 93.3 | |
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