Research Article

Workflow for Genome-Wide Determination of Pre-mRNA Splicing Efficiency from Yeast RNA-seq Data

Table 1

RNA-seq datasets used in this study.

GenotypeArrayExpress acc. ENA acc. Read length (nt)Total readsReads with MAPQ ≥ 10% reads with MAPQ ≥ 10

WTE-MTAB-5149ERR170973910027 789 82925 329 09291,2%
ERR170974010022 000 06220 402 55692,7%
prp45(1-169)E-MTAB-5149ERR170973710027 842 21525 491 56691,6%
ERR170973810025 156 63923 359 54192,9%
WTE-GEOD-44219SRX23352910021 012 04817 127 53681,5%
prp4-1E-GEOD-44219SRX23353510017 142 55914 457 01584,3%
WTE-GEOD-49966SRR95353510135 203 7537 655 22521,8%
prp40-1E-GEOD-49966SRR95353710117 326 5293 596 30420,8%

number for the ArrayExpress database (https://www.ebi.ac.uk/arrayexpress/).
number for the European Nucleotide Archive (http://www.ebi.ac.uk/ena).