Research Article
Workflow for Genome-Wide Determination of Pre-mRNA Splicing Efficiency from Yeast RNA-seq Data
Table 1
RNA-seq datasets used in this study.
| Genotype | ArrayExpress acc. | ENA acc. | Read length (nt) | Total reads | Reads with MAPQ ≥ 10 | % reads with MAPQ ≥ 10 |
| WT | E-MTAB-5149 | ERR1709739 | 100 | 27 789 829 | 25 329 092 | 91,2% | | | ERR1709740 | 100 | 22 000 062 | 20 402 556 | 92,7% | prp45(1-169) | E-MTAB-5149 | ERR1709737 | 100 | 27 842 215 | 25 491 566 | 91,6% | | | ERR1709738 | 100 | 25 156 639 | 23 359 541 | 92,9% | WT | E-GEOD-44219 | SRX233529 | 100 | 21 012 048 | 17 127 536 | 81,5% | prp4-1 | E-GEOD-44219 | SRX233535 | 100 | 17 142 559 | 14 457 015 | 84,3% | WT | E-GEOD-49966 | SRR953535 | 101 | 35 203 753 | 7 655 225 | 21,8% | prp40-1 | E-GEOD-49966 | SRR953537 | 101 | 17 326 529 | 3 596 304 | 20,8% |
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number for the ArrayExpress database (https://www.ebi.ac.uk/arrayexpress/). number for the European Nucleotide Archive (http://www.ebi.ac.uk/ena).
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