Research Article
Genetic Testing in Hereditary Breast and Ovarian Cancer Using Massive Parallel Sequencing
Table 3
Summary of reads obtained and coverage results in 14 GS Junior runs.
| Run | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 |
| Passed filter reads | 113809 | 69455 | 82287 | 73127 | 88687 | 138625 | 72728 | 110271 | 90416 | 136237 | 69811 | 121332 | 80589 | 138238 | Mapped reads | 113445 | 69184 | 81904 | 72835 | 87529 | 137794 | 72522 | 109691 | 89982 | 135982 | 69613 | 12107 | 77080 | 138190 |
| Coverage (number of reads/amplicon) | Mean | 213,28 | 106,88 | 127,26 | 113,81 | 134,03 | 202,36 | 110,44 | 167,54 | 137,11 | 207,24 | 106,07 | 184,66 | 117 | 196.9 | Minimum | 5 | 29 | 22 | 34 | 19 | 24 | 26 | 27 | 31 | 7 | 23 | 21 | 11 | 8 | Maximum | 750 | 377 | 394 | 417 | 1560 | 1455 | 823 | 556 | 439 | 663 | 383 | 728 | 509 | 734 | Amplicons <38 reads (%) | 7 | 13 | 10 | 1 | 20 | 2 | 20 | 2 | 1 | 10 | 8 | 8 | 26 | 18 |
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