Evaluation of the MAScIR SARS-CoV-2 M Kit 2.0 on the SARS-CoV-2 Infection

Table 6

References on GISAID of some cases belonging to the line Alpha, Delta, or Omicron diagnosed at the LCV and sequenced at the Laboratory of Biotechnology of FMP, Rabat.

Virus name	Accession ID	Age	Sex	Thermal cycler	PCR MAScIR (Central Laboratory of Virology-CHUIS)		Variant (ion torrent, Laboratory of Medical Biotechnology, FMP, Rabat)
					Ct RdRp target	Ct S target
hCoV-19/Morocco/FMP-288/2021	EPI_ISL_1905079	69	M	QS5	15	15	VOC 202012/01 GRY (B.1.1.7) first detected in the UK
hCoV-19/Morocco/FMP-280/2021	EPI_ISL_1905060	68	F	QS5	23	23	VOC 202012/01 GRY (B.1.1.7) first detected in the UK
hCoV-19/Morocco/FMP-253/2021	EPI_ISL_1904888	26	F	QS5	30	31	VOC 202012/01 GRY (B.1.1.7) first detected in the UK
hCoV-19/Morocco/FMP-256/2021	EPI_ISL_1904887	23	M	QS5	30	30	VOC 202012/01 GRY (B.1.1.7) first detected in the UK
hCoV-19/Morocco/FMP-255/2021	EPI_ISL_1904886	43	F	QS5	31	31	VOC 202012/01 GRY (B.1.1.7) first detected in the UK
hCoV-19/Morocco/FMP-377/2021	EPI_ISL_13961937	41	F	QS5	24	25	AY.112 (Pango v.4.1.2 PLEARN-v1.12), Delta (B.1.617.2-like) (Scorpio)
hCoV-19/Morocco/FMP381/2021	EPI_ISL_13961936	44	M	QS5	26	27	AY.73 (Pango v.4.1.2 PLEARN-v1.12), Delta (B.1.617.2-like) (Scorpio)
hCoV-19/Morocco/FMP362/2021	EPI_ISL_13961935	30	F	QS5	24	23	AY.33 (Pango v.4.1.2 PLEARN-v1.12), delta (B.1.617.2-like) (Scorpio)
hCoV-19/Morocco/FMP-431/2021	EPI_ISL_13961934	59	M	QS5	26	27	BA.1 (Pango v.4.1.2 PLEARN-v1.12), Omicron (BA.1-like) (Scorpio)
hCoV-19/Morocco/FMP424/2021	EPI_ISL_13961933	25	F	QS5	17	18	BA.1 (Pango v.4.1.2 PLEARN-v1.12), Omicron (BA.1-like) (Scorpio)
hCoV-19/Morocco/FMP447/2021	EPI_ISL_13961859	48	F	QS5	25	26	BA.1 (Pango v.4.1.2 PLEARN-v1.12), Omicron (BA.1-like) (Scorpio)
hCoV-19/Morocco/FMP446/2021	EPI_ISL_13961177	62	F	QS5	25	26	BA.1.10 (Pango v.4.1.2 PLEARN-v1.12), Omicron (BA.1-like) (Scorpio)
hCoV-19/Morocco/FMP408/2021	EPI_ISL_13947433	51	M	QS5	29	29	BA.1 (Pango v.4.1.2 PLEARN-v1.12), Omicron (BA.1-like) (Scorpio)