Research Article
Genetic Diversity and Phylogenetic Analysis of Citrus tristeza virus Isolates from Turkey
Table 2
Percent nucleotide (nt) and amino acid (aa) identity of the CP genes of CTV isolates from different citrus growing regions of Turkey.
| Isolates | | EG-28 (EK-5) | AC-10 (KE-3) | EG-5 (EK-1) | AC-5 (KE-1) | EM-15 (DA-5) | EBS-7 (DK-1) | WM-22 (BA-1) | WM-22 (BA-2) | EM-1 (DA-1) | EM-1 (DA-2) | EM-7 (DA-3) | EBS-38 (DK-4) | EG11 (EK-2) | AC-24 (KE-4) |
| EBS-20 (DK-1) | nt | 100 | 99 | 97 | 97 | 93 | 92 | 93 | 93 | 91 | 92 | 92 | 93 | 93 | 92 | aa | 100 | 97 | 96 | 97 | 94 | 96 | 95 | 94 | 91 | 92 | 93 | 95 | 95 | 95 | EG-28 (EK-5) | nt | | 98 | 97 | 97 | 92 | 92 | 93 | 93 | 91 | 92 | 92 | 93 | 93 | 92 | aa | | 97 | 97 | 97 | 94 | 96 | 96 | 95 | 91 | 92 | 94 | 95 | 95 | 95 | AC-10 (KE-3) | nt | | | 97 | 96 | 92 | 92 | 93 | 93 | 91 | 93 | 92 | 93 | 92 | 93 | aa | | | 96 | 96 | 94 | 95 | 94 | 94 | 91 | 93 | 94 | 95 | 95 | 94 | EG-5 (EK-1) | nt | | | | 99 | 91 | 93 | 92 | 92 | 91 | 91 | 92 | 92 | 93 | 92 | aa | | | | 100 | 94 | 98 | 95 | 95 | 92 | 93 | 95 | 96 | 96 | 96 | AC-5 (KE-1) | nt | | | | | 91 | 93 | 93 | 93 | 91 | 92 | 92 | 93 | 93 | 93 | aa | | | | | 95 | 98 | 96 | 96 | 92 | 94 | 96 | 97 | 97 | 96 | EM-15 (DA-5) | nt | | | | | | 93 | 94 | 94 | 92 | 94 | 93 | 94 | 93 | 93 | aa | | | | | | 95 | 94 | 93 | 90 | 95 | 95 | 94 | 94 | 94 | EBS-7 (DK-1) | nt | | | | | | | 96 | 96 | 95 | 96 | 96 | 96 | 97 | 97 | aa | | | | | | | 96 | 96 | 93 | 95 | 96 | 99 | 99 | 98 | WM-22 (BA-1) | nt | | | | | | | | 99 | 96 | 97 | 97 | 97 | 98 | 98 | aa | | | | | | | | 98 | 94 | 96 | 97 | 99 | 99 | 98 | WM-22 (BA-2) | nt | | | | | | | | | 96 | 97 | 97 | 97 | 98 | 98 | aa | | | | | | | | | 94 | 96 | 97 | 99 | 99 | 98 | EM-1 (DA-1) | nt | | | | | | | | | | 97 | 97 | 97 | 97 | 97 | aa | | | | | | | | | | 93 | 95 | 95 | 95 | 95 | EM-3 (DA-2) | nt | | | | | | | | | | | 98 | 99 | 98 | 98 | aa | | | | | | | | | | | 96 | 97 | 97 | 96 | EM-7 (DA-3) | nt | | | | | | | | | | | | 98 | 98 | 98 | aa | | | | | | | | | | | | 99 | 99 | 98 | EBS-38 (DK-4) | nt | | | | | | | | | | | | | 99 | 99 | aa | | | | | | | | | | | | | 100 | 100 | EG-11 (EK-2) | nt | | | | | | | | | | | | | | 99 | aa | | | | | | | | | | | | | | 100 |
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