Research Article
The Study of Viral RNA Diversity in Bird Samples Using De Novo Designed Multiplex Genus-Specific Primer Panels
Table 2
Primers used in the panel along with their structures.
| Primer set | Primer name | Sequence 5’-3’ |
| 1 | ebola_f | GCAATGTTCAAACACTTTGTGARGC | ebola_r | CTTAACACCATAGCAACGGTTR |
| 2 | marburg_f | TGGACGATAGGAAATCGAGCAC | marburg_r | TGAACTATRTTGCCTGAGTAGTGWG |
| 3 | cueva_f | GTGCCAGAACAGTTTGAACTCA | cueva_r | CCGAATTCTCTGGGTAACACAA |
| 4 | mammarena_f | CAATMCTTGAYATGGGWCARGG | mammarena_r | WGATTTRAACTCTGCAACAAAYCTR |
| 5 | lyssa_f | CTKGAYTATGARAARTGGAACA | lyssa_r | TATGTCGGRCAYARAACCTGRT |
| 6 | ledante_f | AAYAATACATGGCCCACWCC | ledante_r | ARTATTCTCTMARMKCCCARGACAT |
| 7 | alphacorona_f | GGYACHACHTCWGGTGATGS | alphacorona_r | GYTTACGYARRTAACCAWAAWABTC |
| 8 | betacorona_f | GTGCWAAGAATAGAGCYCGCAC | betacorona_r | RTCACAYTTWGGRTAATCCCAACCC |
| 9 | gammacorona_f | CCACATCTGCTAATGTTGCR | gammacorona_r | CAGAAATRTCWGCTACAAGACCYTG |
| 10 | orbi_f1 | TACCGCARGATMGWATGATGAT | orbi_f2 | TATGTTCCWCARGATCGRATGATG | orbi_r | TGCGCTCCAWAVCCATTCCA |
| 11 | orthoreo_f | GTYTCGGCGCCYCAYACDYT | orthoreo_r | GCAGTRTGCTCAGTDGARGT |
| 12 | seadorna_f | CCRCATGAYGTHATGGCYCC | seadorna_r | TCACCWGACTTAACWCCWGM |
| 13 | henipa_f | GGTCAGARACWYTGGTGGAYGA | henipa_r | ARTAYGGATCACTRGCCCARTC |
| 14 | phlebo_f | GATTYAATCTSTKSARRGCY | phlebo_r | YTATYWGYTCCAYCCAGTYYTC |
| 15 | hanta_f | GCWGATGCAACWAARTGGTC | hanta_r | YARRTTYCCYTGYARCCART |
| 16 | nairo_f | CCTTCTTTTSHGGYATGATGCA | nairo_r | GAAGTTAACACTGNCGAWGTWGCATG |
| 17 | orthobunya_f | CWGAWGARATGATWWSTGARCCWGG | orthobunya_r | GCACTCCATTTWGACATRTCWG |
| 18 | thogoto_f | ATCAARGAYMRRCTGAARAANA | thogoto_r | TCGATSYGMGGCTTTATDGM |
| 19 | cardio_f | MRGGYATGGAYCCMATGGAV | cardio_r | AAGTTRGARTARTCYACATCRTAGA |
| 20 | parecho_f | GGRATYAACCCATAYAARGAYTGGC | parecho_r | GAYCCTGATGGCATACCRCC |
| 21 | flavi_f | CTSCTKTGTGACATMGGDGA | flavi_r | TACATCTCRTGYGTGGARTTBC |
| 22 | alpha_f | ACWCTGTTTGTSAACACWGTVRTYA | alpha_r | CTYTTYARRGGGTCTGCSACHC |
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