Research Article
Synthesis, Molecular Docking, Molecular Dynamic Simulation Studies, and Antitubercular Activity Evaluation of Substituted Benzimidazole Derivatives
Table 4
The minimum, maximum, and average values of different parameters, RMSD, RMSF, RGyr, and hydrogen bonding of the studied complexes.
| | Root-mean-square deviation Å (RMSD) | Root-mean-square fluctuation Å (RMSF) | Radius of gyration (RGyr) Å | Hydrogen bonding | Min | Max | Avg | Min | Max | Avg | Min | Max | Avg | Min | Max | Avg |
| Apo KasA protein | 1.09 | 3.36 | 2.53 | 0.37 | 4.83 | 0.99 | 19.39 | 19.62 | 19.54 | — | — | — | 7-KasA complex | 2.22 | 2.89 | 2.33 | 0.33 | 5.39 | 0.87 | 19.37 | 19.60 | 19.53 | 1.00 | 3.00 | 2.69 | 8-KasA complex | 0.84 | 2.86 | 2.42 | 0.36 | 8.41 | 1.00 | 19.36 | 19.62 | 19.51 | 1.00 | 3.00 | 1.72 |
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Min: minimum, Max: maximum, Avg: average.
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