| Gene(s) region | Chr | Pos (Mb) |
| C1q [21] | 1 | 22.96 | IL12RB2 [22] | 1 | 67.55 | PTPN22 [22–25] | 1 | 114.16 | FCGR2A, FCGR3A [26, 27] | 1 | 159.74 | TNFSF4 [22, 28–33] | 1 | 171.42 | NMNAT2 [22, 24, 32] | 1 | 181.48 | NCF2 [22] | 1 | 181.79 | APOBEC4 [28] | 1 | 181.88 | CFH [34] | 1 | 194.89 | CFHR1, CFHR4 [34] | 1 | 196.79 | CRP [35] | 1 | 199.72 | IL10 [22] | 1 | 205.01 | LYST [22] | 1 | 233.89 | RASGRP3 [28, 32] | 2 | 33.51 | TET3, DGUOK [28] | 2 | 74.21 | IFIH1 [22, 36] | 2 | 162.83 | STAT4 [22–24, 32, 37–41] | 2 | 191.60 | PDCD1 [42] | 2 | 242.44 | SCN10A [28] | 3 | 38.71 | TREX1 [43] | 3 | 48.48 | DNASE1L3 [44] | 3 | 58.15 | PXK [22–24] | 3 | 58.29 | TMEM39A [45] | 3 | 120.63 | CD80 [28] | 3 | 120.73 | AFF1 [46] | 4 | 88.15 | BANK1 [23, 28, 47] | 4 | 102.93 | LEF1 [46] | 4 | 109.19 | IL21 [48] | 4 | 123.75 | PPP2CA [49] | 5 | 133.53 | TNIP1 [22, 28, 32] | 5 | 150.39 | PTTG1 [22, 32] | 5 | 159.78 | C4 [50] | 6 | 32.09 | HLA-DRB1 [24, 39, 51–53] | 6 | 32.59 | ITPR3 [54] | 6 | 33.70 | UHRF1BP1 [22, 28] | 6 | 34.87 | BACH2 [28] | 6 | 90.69 | ATG5, PRDM1 [22–24, 28] | 6 | 106.53 | TNFAIP3 [22, 28, 32, 38, 55] | 6 | 138.23 | ICA1 [22, 24] | 7 | 8.12 | JAZF1 [22] | 7 | 27.84 | IKZF1 [28, 32] | 7 | 50.31 | IRF5, TNPO3 [22, 24, 28, 39, 40, 56, 57] | 7 | 128.37 | XKR6 [24] | 8 | 10.79 | BLK [22–24, 28, 39, 40] | 8 | 11.39 | LYN [24] | 8 | 56.95 | ARMC3 [22] | 10 | 23.26
| LRRC18, WDFY4 [28, 32, 33] | 10 | 49.89 | ARID5B, RTKN2 [28] | 10 | 63.94 | SLC29A3 [28] | 10 | 72.75 | PHRF1, IRF7 [22–24] | 11 | 0.58 | CD44, PDHX [28, 58] | 11 | 34.94 | DDX6 [22, 32] | 11 | 118.13 | ETS1 [28, 32, 33] | 11 | 127.83 | CREBL2, GPR19, CDKN1B [28] | 12 | 12.66 | DRAM1 [28] | 12 | 102.27 | SLC15A4 [28, 32] | 12 | 127.84 | ELF1 [28] | 13 | 40.40 | C2 [59] | 14 | 20.75 | CSK [60] | 15 | 72.86 | DNASE1 [61] | 16 | 3.64 | CLEC16A [28] | 16 | 11.04 | PRKCB [62] | 16 | 23.75 | SEZ6L2 [28] | 16 | 29.79 | ITGAM, ITGAX [23, 24, 28, 63] | 16 | 31.18 | IRF8 [22, 45] | 16 | 84.49 | IKZF3, ZPBP2 [45] | 17 | 37.91 | CD226 [22, 57, 64] | 18 | 65.68 | TYK2 [22, 57] | 19 | 10.32 | ICAM1, ICAM4, ICAM5 [65] | 19 | 10.40 | ACP5 [66] | 19 | 11.55 | DDA1 [28] | 19 | 17.28 | UBE2L3 [22–24, 28] | 22 | 20.25 | SCUBE1 [24] | 22 | 41.93 | IRAK1, MECP2 [22, 23, 67, 68] | X | 152.93 |
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