Producing High-Accuracy Lattice Models from Protein Atomic Coordinates Including Side Chains

Table 1

(a) compares the RMSD mean values for backbone-only models for approaches from literature to the results from our LatFit dRMSD-optimisation method on three different lattices. (b) gives according results for side chain including models. *Some reported values had to be rescaled to Å.

(a) Backbone-only models

	Park and Levitt [18]		Reva et al. [14, 22]	Ponty et al. [22]	LatFit
	cRMSD	dRMSD	cRMSD^∗	cRMSD^∗	cRMSD	dRMSD
CUB	2.84	2.34	2.84 (0.748·3.8)	3.46 (0.911·3.8)	2.97	2.08
FCC	1.78	1.46	—	—	1.89	1.34
210	1.24	1.02	—	—	1.29	0.92

(b) Side chain models

	LatFit
	cRMSD	dRMSD
CUB	4.16	2.78
FCC	2.10	1.50
210	1.60	1.13