Synonymous Codon Usage Analysis of Thirty Two Mycobacteriophage Genomes

Table 6

Correlation of Axis1 with other codon usage indices.

	Axis 1
Virus	GC3s	A3s	T3s	G3s	C3s	Gravy	Aromaticity
244	.930**	.729**	.829**	−.230*	−.798**	−0.206^NS	0.178^NS
Bxb1	.891**	.871**	.689**	−.417**	−.603**	−0.222^NS	0.078^NS
Bxz2	.904**	.865**	.676**	−.503**	−.502**	−.323*	−0.16^NS
Che9C	.921**	.854**	.848**	−0.201^NS	−.717**	−0.002^NS	−0.053^NS
Rosebush	.689**	.323**	.743**	0.108^NS	−.638**	0.151^NS	0.028^NS
Omega	.897**	.650**	.771**	−.262**	−.736**	0.004^NS	−0.055^NS
Halo	.746**	.720**	.498**	−0.125^NS	−.641**	−0.091^NS	0.013^NS
Barnyard	.933**	.843**	.792**	−.647**	−.730**	0.02^NS	0.023^NS
Bxz1	.901**	.859**	.729**	−.221**	−.718**	0.005^NS	−0.048^NS
Cjw1	.929**	.796**	.742**	−.362**	−.712**	−.259*	0.153^NS
Corndog	.904**	.647**	.838**	−0.175^NS	−.652**	−0.184^NS	−0.002^NS
Orion	.763**	.641**	.644**	0.099^NS	−.729**	−.362**	−0.169^NS
Plot	.826**	.820**	.594**	−.427**	−.631**	0.172^NS	0.229^NS
Llij	0.15^NS	.763**	−.846**	−.912**	.896**	−0.186^NS	−0.166^NS
Pipefish	.370**	−0.205^NS	−.348**	−0.036^NS	.263*	−0.105^NS	0.185^NS
PMC	0.097^NS	.853**	−.919**	−.944**	.908**	−0.229^NS	−0.078^NS
Qyrzula	.641**	.323**	.731**	0.09^NS	−.588**	0.061^NS	−0.076^NS
Wildcat	0.14^NS	−.788**	.556**	.411**	−0.208^NS	0.017^NS	−0.036^NS
D29	.740**	−.721**	−.479**	0.126^NS	.634**	0.241^NS	−0.041^NS
L5	.862**	−.775**	−.670**	.384**	.485**	.296*	−0.071^NS
PBI1	.845**	−.806**	−.664**	.365**	.705**	−0.131^NS	−.269*
PG1	.740**	−0.524^NS	−.678**	−0.219^NS	.753**	.277**	0.118^NS
Cooper	.782**	−.782**	−.609**	0.153^NS	.563**	0.2^NS	−0.001^NS
Che12	.803**	−.752**	−.596**	0.201^NS	.650**	0.214^NS	−0.249^NS
Catera	.914**	−.840**	−.766**	.233**	.702**	0.041^NS	0.002^NS
TM4	0.085^NS	‒.313*	0.258^NS	0.182^NS	−0.094^NS	0.003^NS	0.008^NS
Bethelhem	.882**	−.881**	.625**	.505**	.602**	0.229^NS	.294*
Che8	0.124^NS	.816**	.883**	−.917**	.899**	−0.242^NS	−0.189^NS
Tweety	0.113^NS	.797**	.891**	.934**	.902**	0.231^NS	0.098^NS
Giles	.352**	.730**	0.447^NS	.887**	.691**	.444**	0.102^NS
U2	.922**	.918**	.737**	.522**	.537**	0.066^NS	0.01^NS
Che9d	0.16^NS	.778**	.831**	.857**	.862**	0.027^NS	0.231^NS

Notable significant relationships are marked by or , ^NSNonsignificant.