Synonymous Codon Usage Analysis of Thirty Two Mycobacteriophage Genomes

Table 3

GC % and base composition in the third codon position for 32 mycobacteriophage genomes.

Virus	G C	GC1s	GC2s	GC (1st 2nd)	GC3s	C3s	T3s	A3s	G3s
244	63.26	63.3	44.7	54	81	51.14	10.58	8.88	30.01
Bxb1	63.43	63.4	45.7	54.55	80.4	44.89	11.53	8.53	35.63
Bxz2	64.41	64	45.6	54.8	83	48.62	9.12	8.25	34.56
Che9C	65.66	66	48.9	57.45	81.4	47.27	10.17	8.9	34.16
Rosebush	69.16	68.3	49.8	59.05	88.5	51.21	6.26	5.36	37.73
Omega	61.48	62.4	45.1	53.75	76.1	45.43	13.88	10.78	30.52
Halo	63.79	63.4	44.5	53.95	82.7	47.4	9.57	8.06	35.5
Barnyard	58.05	60.9	45.5	53.2	67	38.55	18.39	15.97	27.68
Bxz1	65.04	64.1	44.9	54.5	85.3	51.84	9.61	5.39	33.72
Cjw1	63.52	63.7	45.1	54.4	81	51.39	10.2	9.27	29.76
Corndog	65.64	64.8	48.4	56.6	83	46.49	9.76	7.7	36.64
Orion	66.9	66.6	50.2	58.4	83.17	50.46	10.19	7.04	32.85
Plot	60.22	61.6	44.3	52.95	74.1	42.4	15.73	11.05	31.34
Llij	61.66	62.4	48.9	55.65	73.1	39.73	16.12	11.79	32.87
Pipefish	67.64	65.4	49.3	57.35	87.5	49.1	7.19	5.51	38.72
PMC	61.46	62.8	48.2	55.5	72.8	39.67	15.81	12.38	32.66
Qyrzula	69.14	68.1	49.8	58.95	88.6	51.07	6.08	5.41	38
Wildcat	57.03	59.8	42.8	51.3	67.7	35.37	22.27	11.57	31.45
D29	63.78	63.4	44.4	53.9	82.9	47.52	9.51	8	35.49
L5	62.49	62.1	43.5	52.8	81.2	47.45	10.01	9.3	33.79
PBI1	60.28	61.4	44.3	52.85	74.5	42.71	15.41	10.99	31.37
PG1	66.83	66.5	50.2	58.35	83.12	50.46	10.24	7.07	32.79
Cooper	69.26	67.6	50	58.8	89.47	52.65	6.32	4.38	37.19
Che12	63.26	62.5	44.4	53.45	82.25	48.61	9.86	8.3	33.79
Catera	65.17	64.1	44.9	54.5	85.8	52.29	9.44	5.1	33.71
Che8	61.41	63.71	48.6	56.16	70.57	37.08	16.05	12.52	34.32
TM4	68.7	68.3	48.9	58.6	88.19	47.26	6.66	5.08	40.99
Che9d	61.4	63.02	48.15	55.59	71.6	37.07	15.54	11.94	35.41
Bethlehem	63.29	63.37	45.22	54.30	80.35	42.56	11.32	7.93	38.15
Giles	67.89	66.55	52.72	59.64	83.38	48.11	6.26	10.06	35.55
Tweety	61.83	63.12	48.89	56.01	72.07	38.77	14.85	12.15	34.2
U2	63.87	63.61	45.92	54.77	81.1	43.53	10.68	7.83	37.94